Gene-function association network
Dataset information
This is a gene-function association network that contains information on various roles that human genes have. Nodes represent biological functions and genes, and edges represent functional annotations of genes.
| Dataset statistics | |
|---|---|
| Nodes | 22585 |
| Function nodes | 16628 |
| Gene nodes | 5957 |
| Edges | 16628 |
| Nodes in largest SCC | 46 |
| Fraction of nodes in largest SCC | 1.000000 |
| Edges in largest SCC | 45 |
| Fraction of edges in largest SCC | 0.002706 |
| Diameter (longest shortest path) | 2 |
| 90-percentile effective diameter | 1.842222 |
The information is extracted from the Gene Ontology (GO) functional annotations.
References
- Gene Ontology: tool for the unification of biology. Ashburner, Michael, et al. Nature Genetics. 2000.
- MINER: Gigascale multimodal biological network. Stanford SNAP Group. GitHub Repository. 2017.
Files
| File | Size | Description |
|---|---|---|
| GF-Miner_miner-gene-function.tsv.gz | 2.7MB | Gene-function associations (including additional information on gene names and functions) |